CDS

Accession Number TCMCG016C26323
gbkey CDS
Protein Id OMO54345.1
Location join(9..33,125..236,317..771,874..1000,1173..1414,1510..1633,1739..1928,2023..2130,2264..2517,2648..3264,3359..3465,3576..3830,3915..4388,4479..4640,4759..4956,5040..5318,5447..5689,5797..5988)
Organism Corchorus capsularis
locus_tag CCACVL1_27859

Protein

Length 1387aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA215142; BioSample:SAMN03290679;
db_source AWWV01014987.1
Definition JAB1/Mov34/MPN/PAD-1 [Corchorus capsularis]
Locus_tag CCACVL1_27859

EGGNOG-MAPPER Annotation

COG_category A
Description pre-mRNA-processing-splicing factor
KEGG_TC -
KEGG_Module M00354        [VIEW IN KEGG]
M00355        [VIEW IN KEGG]
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko00002        [VIEW IN KEGG]
ko03041        [VIEW IN KEGG]
KEGG_ko ko:K12856        [VIEW IN KEGG]
EC -
KEGG_Pathway ko03040        [VIEW IN KEGG]
map03040        [VIEW IN KEGG]
GOs GO:0000244        [VIEW IN EMBL-EBI]
GO:0000375        [VIEW IN EMBL-EBI]
GO:0000377        [VIEW IN EMBL-EBI]
GO:0000380        [VIEW IN EMBL-EBI]
GO:0000386        [VIEW IN EMBL-EBI]
GO:0000387        [VIEW IN EMBL-EBI]
GO:0000398        [VIEW IN EMBL-EBI]
GO:0002237        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003729        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005515        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005681        [VIEW IN EMBL-EBI]
GO:0005682        [VIEW IN EMBL-EBI]
GO:0005684        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006397        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008380        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009617        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0016020        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016071        [VIEW IN EMBL-EBI]
GO:0017069        [VIEW IN EMBL-EBI]
GO:0017070        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0022618        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0030532        [VIEW IN EMBL-EBI]
GO:0030619        [VIEW IN EMBL-EBI]
GO:0030620        [VIEW IN EMBL-EBI]
GO:0030623        [VIEW IN EMBL-EBI]
GO:0031593        [VIEW IN EMBL-EBI]
GO:0032496        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0033993        [VIEW IN EMBL-EBI]
GO:0034097        [VIEW IN EMBL-EBI]
GO:0034612        [VIEW IN EMBL-EBI]
GO:0034622        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0036002        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0046540        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0065003        [VIEW IN EMBL-EBI]
GO:0070530        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0071005        [VIEW IN EMBL-EBI]
GO:0071007        [VIEW IN EMBL-EBI]
GO:0071011        [VIEW IN EMBL-EBI]
GO:0071013        [VIEW IN EMBL-EBI]
GO:0071216        [VIEW IN EMBL-EBI]
GO:0071219        [VIEW IN EMBL-EBI]
GO:0071222        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071345        [VIEW IN EMBL-EBI]
GO:0071356        [VIEW IN EMBL-EBI]
GO:0071396        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071826        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0097157        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0097525        [VIEW IN EMBL-EBI]
GO:0097526        [VIEW IN EMBL-EBI]
GO:0120114        [VIEW IN EMBL-EBI]
GO:0140030        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901700        [VIEW IN EMBL-EBI]
GO:1901701        [VIEW IN EMBL-EBI]
GO:1902494        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCTTATCTTGACCAATATCTATGGTATAAACAATCTGCAAGGGATATGGGACACAAGTGAGGGGCAGTGTGTGGTCATGCTTCAAACGAAGTTTGAGAAGTTCTTTGAGAAGATTGACTTGACAATGTTAAACAGGCTTCTGCGTTTGGTGCTTGATCACAACATTGCAGATTATGTTACTGCCAAAAATAATGTGGTTCTGTCTTACAAAGATATGAGTCACACGAATTCATACGGTCTTATACGTGGTCTGCAGTTTGCTTCTTTTGTTGTCCAGTATTATGGACTTGTTTTGGATCTGTTGCTTCTTGGGTTGACTCGTGCTAGCGAGATTGCTGGTCCTCCCCAAATGCCAAATGAATTCATCTCATACTGGGACACAAAAGTTGAGACCCGACATCCAACTCGTCTGTACTCTAGGTACATTGATAAGGTGCATATATTATTCAGATTCACTCATGAAGAGGCACGGGACCTTATCCAGCGATATCTCACTGAACATCCTGATCCAAACAACGAAAACATGGTCGGATATAACAACAAGAAATGCTGGCCAAGAGATGCTAGAATGAGGCTTATGAAACATGATGTTAATCTTGGGAGAAGTGTCTTTTGGGACATGAAGAACCGTTTACCTAGAAGCATCACGACTTTGGAGTGGGAGAACAGCTTCGTTTCTGTCTATAGCAAGGACAATCCCAACCTTCTTTTTAGCATGTGTGGTTTTGAAATTCGGATAAATCCAAAAATAAGAATGACTCAAGAAGCATTTAACAGTACAAGAGAGGGAGTTTGGGACTTGCAGAATGAACAAACAAAAGAGAGAACAGCAAAGGCTTACTTACGGGTTGATGATGATCACATGAAGGTATTTGAAAATCGTGTTAGGCAGATCCTCATGTCTTCTGGGTCAACCACATTTACCAAGATCGTCAACAAATGGAATACTGCCTTAATAGGTCTTATGACTTACTTCCGTGAAGCAACTGTAAATACACAAGAGCTTTTGGATCTGCTGGTTAAATGTGAAAACAAAATTCAAACTCGTATCAAAATTGGCCTGAATTCAAAAATGCCTAGTCGATTTCCCCCGGTCATCTTTTACACTCCGAAAGAAATTGGAGGACTTGGCATGTTATCTATGGGTCACATATTGATTCCACAGAGTGACCTCCGATACAGTCAGCAGACTGATGTTGGTGTAACTCACTTTAGGAGTGGACTGAGTCATGAACAGGACCAGCTGATTCCAAATCTTTTTCGGTACATACAGCCATGGTCGAGTGAGTTCATAGACTCGCAGTGTGTTTGGGCAGAGTATGCACTGAAGAGGCAGGAAGCTCAGGCACAAAATAGGCGTCTAACCCTGGAAGATTTGGAAGATTCTTGGGATAAGGGAATTCCACGTATAAATACTTTGTTCCAGAAGGATAGGCACACATTAGCATATGACAAGGGATGGAGAGTACGTACAGACTTTAAGCAGTACCAAGTTTTGAAGCAGAATCCATTCTGGTGGACTCACCAGAGGCATGATGGCAAATTGTGGAACTTGAACAACTATCGAACTGATGTCATCCAAGCTCTGGGAGGTGTTGAGGGGATTCTGGAACATACTCTGTTTAAAGGAACATACTTTCCAACTTGGGAGGGTCTGTTTTGGGAAAAGGCTTCTGGATTTGAGGAGTCAATGAAATATAAGAAGCTCACTAATGCTCAGAGATCCGGTCTTAACCAGATTCCTAACCGTAGGTTTACTCTTTGGTGGTCACCAACAATCAATCGGGCTAATGTTTATGTTGGTTTTCAAGTGCAACTAGATCTAACCGGAATTTTCATGCATGGGAAGATCCCAACCTTGAAAATATCTTTGATTCAAATTTTCCGTGCTCATTTGTGGCAAAAGATTCATGAGAGTGTGGTTATGGATATTTGCCAAGTCTTGGATCAGGAGTTGGATGCTTTGGAAATTGAAACTGTTCAGAAGGAGACAATCCATCCAAGGAAGAGTTACAAGATGAACAGCTCGTGTGCAGATATTCTTCTCTTTGCAGCGCATAGGTGGCCTATGTCAAAGCCTAGTCTTGTTGCTGAGTCCAAGGACATGTTTGATCAAAAAGCAAGCAATAAGTATTGGGTAGATGTACAGCTCCGGTGGGGAGATTATGACTCGCATGATATTGAGCGTTACACTAGAGCTAAATTCATGGATTATACAACAGACAACATGTCTATATATCCATCTCCAACTGGGGTGATGATTGGCATTGATTTGGCTTACAATTTGCATTCTGCTTTTGGTAACTGGTTTCCTGGATCAAAGCCACTGCTTGCTCAGGCAATGAATAAGATCATGAAGTCAAATCCTGCTTTATATGTCTTAAGGGAGCGGATAAGGAAAGGTTTGCAGTTGTATTCTTCTGAGCCTACTGAGCCTTACCTTTCGTCACAAAACTATGGAGAGATTTTCAGCAACCAGATCATATGGTTTGTTGATGACACCAATGTGTATCGTGTTACAATCCACAAGACTTTTGAAGGGAATCTCACAACAAAACCCATTAATGGTGCTATCTTTATATTCAATCCACGGACCGGACAATTGTTCCTGAAGGTCATTCACACAAGTGTGTGGGCAGGTCAAAAGCGTCTTGGTCAGTTAGCCAAGTGGAAAACTGCTGAAGAAGTTGCTGCTCTTGTGCGGTCTTTGCCTGTTGAAGAACAACCAAAGCAAATTATTGTTACTCGCAAGGGAATGCTTGATCCTTTGGAGGTTCACTTACTGGATTTCCCCAACGTAGTTATCAAGGGAAGTGAGCTGCAGCTCCCATTCCAGGCTTGCTTGAAAATTGAGAAATTTGGGGATCTGATTCTGAAGGCTACAGAGCCGCAAATGGTTTTGTTCAATATCTATGATGACTGGTTGAAGAGTATCTCGTCATACACTGCATTTTCTCGACTCATTCTGATTCTTCGTGCGCTTCATGTGAACAATGAGAAGGCTAAGATGTTACTGAAACCTGACAAAACAATTGTTACTGAGCCACACCATATCTGGCCTTCTCTTACAGATGAACAATGGACGAAGGTTGAAGTTGCTTTAAGAGATCTTATACTCTCTGACTATGCCAAAAAGAACAATGTGAACACATCAGCCTTGACACAGTCTGAGATTCGTGATATTATTCTAGGAGCAGAGATTACTCCACCCTCTCAACAAAGGCAACAAATAGCAGAAATTGAGAAACAGGCCAAGGAGGCAAGCCAGCTGACAGCTGTGACAACTAAGACTACGAATGTGCATGGTGATGAGCTCATTGTCACAACCACGAGTCCCTATGAGCAAGCAGCATTTGGTTCGAAGACTGATTGGCGTGTTAGAGCAATATCAGCGACTAACCTTTATCTCCGAGTCAATCATATATATGTCAACTCAGAGGACATAAAGGAAACTGGTTACACCTATATCATGCCAAAGAACATTTTGAAGAAATTCATCTGCATAGCTGATCTTCGGACTCAAATTGCTGGATACTTGTACGGAATCAGTCCTCCTGACAACCCTCAGGTTAAGGAAATTCGCTGCATTGCCATGGTACCACAGTGGGGAACTCATCAGCAAGTTCATCTTCCATCTGCTCTACCTGAACATGATTTCTTGAATGATCTAGAGCCTTTGGGTTGGATGCACACACAACCGAATGAGCTTCCTCAATTATCGCCACAGGATGTTACCTCACATGCCCGGATTTTAGAGAATAACAAGCAGTGGGATGGAGAGAAGTGCATTATCTTGACATGCAGTTTCACTCCAGGTTCCTGCTCGTTAACAGCATTCAAGCTCACTCCAAGTGGTTATGAATGGGGACGGGTTAACAAGGACACAGGAAGCAATCCTCATGGTTACAGTCCAACTCATTATGAGAAGGTGCAGATGCTCTTAAGTGATCGGTTCCTCGGATTTTATATGGTTCCGGACAATGGTCCATGGAATTACAATTTCATGGGAGTGAAGCATACGGTTAGCATGAAATACGGGGTGAAGCTTGGCACGCCTAGAGAATACTACCATGAGGATCACAGAGCAACTCATTTCCTTGAGTTCAGCAACTTGGAGGAAGGCGATACTGCGGAGGGTGATCGGGAAGATACATTTACATAA
Protein:  
MLILTNIYGINNLQGIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPNEFISYWDTKVETRHPTRLYSRYIDKVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNLLFSMCGFEIRINPKIRMTQEAFNSTREGVWDLQNEQTKERTAKAYLRVDDDHMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGLSHEQDQLIPNLFRYIQPWSSEFIDSQCVWAEYALKRQEAQAQNRRLTLEDLEDSWDKGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDICQVLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAESKDMFDQKASNKYWVDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAFGNWFPGSKPLLAQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNVVIKGSELQLPFQACLKIEKFGDLILKATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTIVTEPHHIWPSLTDEQWTKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAEIEKQAKEASQLTAVTTKTTNVHGDELIVTTTSPYEQAAFGSKTDWRVRAISATNLYLRVNHIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCIAMVPQWGTHQQVHLPSALPEHDFLNDLEPLGWMHTQPNELPQLSPQDVTSHARILENNKQWDGEKCIILTCSFTPGSCSLTAFKLTPSGYEWGRVNKDTGSNPHGYSPTHYEKVQMLLSDRFLGFYMVPDNGPWNYNFMGVKHTVSMKYGVKLGTPREYYHEDHRATHFLEFSNLEEGDTAEGDREDTFT